| Line | Branch | Exec | Source |
|---|---|---|---|
| 1 | /* | ||
| 2 | - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - | ||
| 3 | SLEPc - Scalable Library for Eigenvalue Problem Computations | ||
| 4 | Copyright (c) 2002-, Universitat Politecnica de Valencia, Spain | ||
| 5 | |||
| 6 | This file is part of SLEPc. | ||
| 7 | SLEPc is distributed under a 2-clause BSD license (see LICENSE). | ||
| 8 | - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - | ||
| 9 | */ | ||
| 10 | |||
| 11 | static char help[] = "Illustrates the computation of left eigenvectors.\n\n" | ||
| 12 | "The problem is the Markov model as in ex5.c.\n" | ||
| 13 | "The command line options are:\n" | ||
| 14 | " -m <m>, where <m> = number of grid subdivisions in each dimension.\n\n"; | ||
| 15 | |||
| 16 | #include <slepceps.h> | ||
| 17 | |||
| 18 | /* | ||
| 19 | User-defined routines | ||
| 20 | */ | ||
| 21 | PetscErrorCode MatMarkovModel(PetscInt,Mat); | ||
| 22 | PetscErrorCode ComputeResidualNorm(Mat,PetscBool,PetscScalar,PetscScalar,Vec,Vec,Vec,PetscReal*); | ||
| 23 | |||
| 24 | 40 | int main(int argc,char **argv) | |
| 25 | { | ||
| 26 | 40 | Vec v0,w0; /* initial vectors */ | |
| 27 | 40 | Mat A; /* operator matrix */ | |
| 28 | 40 | EPS eps; /* eigenproblem solver context */ | |
| 29 | 40 | EPSType type; | |
| 30 | 40 | PetscInt i,N,m=15,nconv; | |
| 31 | 40 | PetscBool twosided; | |
| 32 | 40 | PetscReal nrmr,nrml=0.0,re,im,lev; | |
| 33 | 40 | PetscScalar *kr,*ki; | |
| 34 | 40 | Vec t,*xr,*xi,*yr,*yi; | |
| 35 | 40 | PetscMPIInt rank; | |
| 36 | |||
| 37 |
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40 | PetscFunctionBeginUser; |
| 38 |
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40 | PetscCall(SlepcInitialize(&argc,&argv,NULL,help)); |
| 39 | |||
| 40 |
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40 | PetscCall(PetscOptionsGetInt(NULL,NULL,"-m",&m,NULL)); |
| 41 | 40 | N = m*(m+1)/2; | |
| 42 |
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40 | PetscCall(PetscPrintf(PETSC_COMM_WORLD,"\nMarkov Model, N=%" PetscInt_FMT " (m=%" PetscInt_FMT ")\n\n",N,m)); |
| 43 | |||
| 44 | /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - | ||
| 45 | Compute the operator matrix that defines the eigensystem, Ax=kx | ||
| 46 | - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ | ||
| 47 | |||
| 48 |
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40 | PetscCall(MatCreate(PETSC_COMM_WORLD,&A)); |
| 49 |
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40 | PetscCall(MatSetSizes(A,PETSC_DECIDE,PETSC_DECIDE,N,N)); |
| 50 |
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40 | PetscCall(MatSetFromOptions(A)); |
| 51 |
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40 | PetscCall(MatMarkovModel(m,A)); |
| 52 |
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40 | PetscCall(MatCreateVecs(A,NULL,&t)); |
| 53 | |||
| 54 | /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - | ||
| 55 | Create the eigensolver and set various options | ||
| 56 | - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ | ||
| 57 | |||
| 58 |
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40 | PetscCall(EPSCreate(PETSC_COMM_WORLD,&eps)); |
| 59 |
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40 | PetscCall(EPSSetOperators(eps,A,NULL)); |
| 60 |
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40 | PetscCall(EPSSetProblemType(eps,EPS_NHEP)); |
| 61 | |||
| 62 | /* use a two-sided algorithm to compute left eigenvectors as well */ | ||
| 63 |
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40 | PetscCall(EPSSetTwoSided(eps,PETSC_TRUE)); |
| 64 | |||
| 65 | /* allow user to change settings at run time */ | ||
| 66 |
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40 | PetscCall(EPSSetFromOptions(eps)); |
| 67 |
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40 | PetscCall(EPSGetTwoSided(eps,&twosided)); |
| 68 | |||
| 69 | /* | ||
| 70 | Set the initial vectors. This is optional, if not done the initial | ||
| 71 | vectors are set to random values | ||
| 72 | */ | ||
| 73 |
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40 | PetscCall(MatCreateVecs(A,&v0,&w0)); |
| 74 |
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40 | PetscCallMPI(MPI_Comm_rank(PETSC_COMM_WORLD,&rank)); |
| 75 |
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40 | if (!rank) { |
| 76 |
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40 | PetscCall(VecSetValue(v0,0,1.0,INSERT_VALUES)); |
| 77 |
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40 | PetscCall(VecSetValue(v0,1,1.0,INSERT_VALUES)); |
| 78 |
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40 | PetscCall(VecSetValue(v0,2,1.0,INSERT_VALUES)); |
| 79 |
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40 | PetscCall(VecSetValue(w0,0,2.0,INSERT_VALUES)); |
| 80 |
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40 | PetscCall(VecSetValue(w0,2,0.5,INSERT_VALUES)); |
| 81 | } | ||
| 82 |
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40 | PetscCall(VecAssemblyBegin(v0)); |
| 83 |
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40 | PetscCall(VecAssemblyBegin(w0)); |
| 84 |
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40 | PetscCall(VecAssemblyEnd(v0)); |
| 85 |
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40 | PetscCall(VecAssemblyEnd(w0)); |
| 86 |
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40 | PetscCall(EPSSetInitialSpace(eps,1,&v0)); |
| 87 |
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40 | PetscCall(EPSSetLeftInitialSpace(eps,1,&w0)); |
| 88 | |||
| 89 | /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - | ||
| 90 | Solve the eigensystem | ||
| 91 | - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ | ||
| 92 | |||
| 93 |
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40 | PetscCall(EPSSolve(eps)); |
| 94 | |||
| 95 | /* | ||
| 96 | Optional: Get some information from the solver and display it | ||
| 97 | */ | ||
| 98 |
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40 | PetscCall(EPSGetType(eps,&type)); |
| 99 |
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40 | PetscCall(PetscPrintf(PETSC_COMM_WORLD," Solution method: %s\n\n",type)); |
| 100 | |||
| 101 | /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - | ||
| 102 | Display solution and clean up | ||
| 103 | - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ | ||
| 104 | |||
| 105 | /* | ||
| 106 | Get number of converged approximate eigenpairs | ||
| 107 | */ | ||
| 108 |
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40 | PetscCall(EPSGetConverged(eps,&nconv)); |
| 109 |
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40 | PetscCall(PetscPrintf(PETSC_COMM_WORLD," Number of converged eigenpairs: %" PetscInt_FMT "\n\n",nconv)); |
| 110 |
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40 | PetscCall(PetscMalloc2(nconv,&kr,nconv,&ki)); |
| 111 |
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40 | PetscCall(VecDuplicateVecs(t,nconv,&xr)); |
| 112 |
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40 | PetscCall(VecDuplicateVecs(t,nconv,&xi)); |
| 113 |
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40 | if (twosided) { |
| 114 |
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40 | PetscCall(VecDuplicateVecs(t,nconv,&yr)); |
| 115 |
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40 | PetscCall(VecDuplicateVecs(t,nconv,&yi)); |
| 116 | } | ||
| 117 | |||
| 118 |
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40 | if (nconv>0) { |
| 119 | /* | ||
| 120 | Display eigenvalues and relative errors | ||
| 121 | */ | ||
| 122 |
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40 | PetscCall(PetscPrintf(PETSC_COMM_WORLD, |
| 123 | " k ||Ax-kx|| ||y'A-y'k||\n" | ||
| 124 | " ---------------- ------------------ ------------------\n")); | ||
| 125 | |||
| 126 |
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210 | for (i=0;i<nconv;i++) { |
| 127 | /* | ||
| 128 | Get converged eigenpairs: i-th eigenvalue is stored in kr (real part) and | ||
| 129 | ki (imaginary part) | ||
| 130 | */ | ||
| 131 |
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170 | PetscCall(EPSGetEigenpair(eps,i,&kr[i],&ki[i],xr[i],xi[i])); |
| 132 |
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170 | if (twosided) PetscCall(EPSGetLeftEigenvector(eps,i,yr[i],yi[i])); |
| 133 | /* | ||
| 134 | Compute the residual norms associated to each eigenpair | ||
| 135 | */ | ||
| 136 |
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170 | PetscCall(ComputeResidualNorm(A,PETSC_FALSE,kr[i],ki[i],xr[i],xi[i],t,&nrmr)); |
| 137 |
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170 | if (twosided) PetscCall(ComputeResidualNorm(A,PETSC_TRUE,kr[i],ki[i],yr[i],yi[i],t,&nrml)); |
| 138 | |||
| 139 | #if defined(PETSC_USE_COMPLEX) | ||
| 140 | 85 | re = PetscRealPart(kr[i]); | |
| 141 | 85 | im = PetscImaginaryPart(kr[i]); | |
| 142 | #else | ||
| 143 | 85 | re = kr[i]; | |
| 144 | 85 | im = ki[i]; | |
| 145 | #endif | ||
| 146 |
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170 | if (im!=0.0) PetscCall(PetscPrintf(PETSC_COMM_WORLD," %8f%+8fi %12g %12g\n",(double)re,(double)im,(double)nrmr,(double)nrml)); |
| 147 |
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170 | else PetscCall(PetscPrintf(PETSC_COMM_WORLD," %12f %12g %12g\n",(double)re,(double)nrmr,(double)nrml)); |
| 148 | } | ||
| 149 |
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40 | PetscCall(PetscPrintf(PETSC_COMM_WORLD,"\n")); |
| 150 | /* | ||
| 151 | Check bi-orthogonality of eigenvectors | ||
| 152 | */ | ||
| 153 |
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40 | if (twosided) { |
| 154 |
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40 | PetscCall(VecCheckOrthogonality(xr,nconv,yr,nconv,NULL,NULL,&lev)); |
| 155 |
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40 | if (lev<100*PETSC_MACHINE_EPSILON) PetscCall(PetscPrintf(PETSC_COMM_WORLD," Level of bi-orthogonality of eigenvectors < 100*eps\n\n")); |
| 156 | ✗ | else PetscCall(PetscPrintf(PETSC_COMM_WORLD," Level of bi-orthogonality of eigenvectors: %g\n\n",(double)lev)); | |
| 157 | } | ||
| 158 | } | ||
| 159 | |||
| 160 |
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40 | PetscCall(EPSDestroy(&eps)); |
| 161 |
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40 | PetscCall(MatDestroy(&A)); |
| 162 |
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40 | PetscCall(VecDestroy(&v0)); |
| 163 |
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40 | PetscCall(VecDestroy(&w0)); |
| 164 |
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40 | PetscCall(VecDestroy(&t)); |
| 165 |
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40 | PetscCall(PetscFree2(kr,ki)); |
| 166 |
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40 | PetscCall(VecDestroyVecs(nconv,&xr)); |
| 167 |
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40 | PetscCall(VecDestroyVecs(nconv,&xi)); |
| 168 |
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40 | if (twosided) { |
| 169 |
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40 | PetscCall(VecDestroyVecs(nconv,&yr)); |
| 170 |
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40 | PetscCall(VecDestroyVecs(nconv,&yi)); |
| 171 | } | ||
| 172 |
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40 | PetscCall(SlepcFinalize()); |
| 173 | return 0; | ||
| 174 | } | ||
| 175 | |||
| 176 | /* | ||
| 177 | Matrix generator for a Markov model of a random walk on a triangular grid. | ||
| 178 | |||
| 179 | This subroutine generates a test matrix that models a random walk on a | ||
| 180 | triangular grid. This test example was used by G. W. Stewart ["{SRRIT} - a | ||
| 181 | FORTRAN subroutine to calculate the dominant invariant subspaces of a real | ||
| 182 | matrix", Tech. report. TR-514, University of Maryland (1978).] and in a few | ||
| 183 | papers on eigenvalue problems by Y. Saad [see e.g. LAA, vol. 34, pp. 269-295 | ||
| 184 | (1980) ]. These matrices provide reasonably easy test problems for eigenvalue | ||
| 185 | algorithms. The transpose of the matrix is stochastic and so it is known | ||
| 186 | that one is an exact eigenvalue. One seeks the eigenvector of the transpose | ||
| 187 | associated with the eigenvalue unity. The problem is to calculate the steady | ||
| 188 | state probability distribution of the system, which is the eigevector | ||
| 189 | associated with the eigenvalue one and scaled in such a way that the sum all | ||
| 190 | the components is equal to one. | ||
| 191 | |||
| 192 | Note: the code will actually compute the transpose of the stochastic matrix | ||
| 193 | that contains the transition probabilities. | ||
| 194 | */ | ||
| 195 | 40 | PetscErrorCode MatMarkovModel(PetscInt m,Mat A) | |
| 196 | { | ||
| 197 | 40 | const PetscReal cst = 0.5/(PetscReal)(m-1); | |
| 198 | 40 | PetscReal pd,pu; | |
| 199 | 40 | PetscInt Istart,Iend,i,j,jmax,ix=0; | |
| 200 | |||
| 201 |
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40 | PetscFunctionBeginUser; |
| 202 |
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40 | PetscCall(MatGetOwnershipRange(A,&Istart,&Iend)); |
| 203 |
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640 | for (i=1;i<=m;i++) { |
| 204 | 600 | jmax = m-i+1; | |
| 205 |
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5400 | for (j=1;j<=jmax;j++) { |
| 206 | 4800 | ix = ix + 1; | |
| 207 |
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4800 | if (ix-1<Istart || ix>Iend) continue; /* compute only owned rows */ |
| 208 |
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4800 | if (j!=jmax) { |
| 209 | 4200 | pd = cst*(PetscReal)(i+j-1); | |
| 210 | /* north */ | ||
| 211 |
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4200 | if (i==1) PetscCall(MatSetValue(A,ix-1,ix,2*pd,INSERT_VALUES)); |
| 212 |
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3640 | else PetscCall(MatSetValue(A,ix-1,ix,pd,INSERT_VALUES)); |
| 213 | /* east */ | ||
| 214 |
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4200 | if (j==1) PetscCall(MatSetValue(A,ix-1,ix+jmax-1,2*pd,INSERT_VALUES)); |
| 215 |
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3640 | else PetscCall(MatSetValue(A,ix-1,ix+jmax-1,pd,INSERT_VALUES)); |
| 216 | } | ||
| 217 | /* south */ | ||
| 218 | 4800 | pu = 0.5 - cst*(PetscReal)(i+j-3); | |
| 219 |
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4800 | if (j>1) PetscCall(MatSetValue(A,ix-1,ix-2,pu,INSERT_VALUES)); |
| 220 | /* west */ | ||
| 221 |
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4800 | if (i>1) PetscCall(MatSetValue(A,ix-1,ix-jmax-2,pu,INSERT_VALUES)); |
| 222 | } | ||
| 223 | } | ||
| 224 |
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40 | PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); |
| 225 |
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40 | PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); |
| 226 |
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8 | PetscFunctionReturn(PETSC_SUCCESS); |
| 227 | } | ||
| 228 | |||
| 229 | /* | ||
| 230 | ComputeResidualNorm - Computes the norm of the residual vector | ||
| 231 | associated with an eigenpair. | ||
| 232 | |||
| 233 | Input Parameters: | ||
| 234 | trans - whether A' must be used instead of A | ||
| 235 | kr,ki - eigenvalue | ||
| 236 | xr,xi - eigenvector | ||
| 237 | u - work vector | ||
| 238 | */ | ||
| 239 | 340 | PetscErrorCode ComputeResidualNorm(Mat A,PetscBool trans,PetscScalar kr,PetscScalar ki,Vec xr,Vec xi,Vec u,PetscReal *norm) | |
| 240 | { | ||
| 241 | #if !defined(PETSC_USE_COMPLEX) | ||
| 242 | 170 | PetscReal ni,nr; | |
| 243 | #endif | ||
| 244 |
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340 | PetscErrorCode (*matmult)(Mat,Vec,Vec) = trans? MatMultTranspose: MatMult; |
| 245 | |||
| 246 |
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340 | PetscFunctionBegin; |
| 247 | #if !defined(PETSC_USE_COMPLEX) | ||
| 248 |
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170 | if (ki == 0 || PetscAbsScalar(ki) < PetscAbsScalar(kr*PETSC_MACHINE_EPSILON)) { |
| 249 | #endif | ||
| 250 |
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340 | PetscCall((*matmult)(A,xr,u)); |
| 251 |
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340 | if (PetscAbsScalar(kr) > PETSC_MACHINE_EPSILON) PetscCall(VecAXPY(u,-kr,xr)); |
| 252 |
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340 | PetscCall(VecNorm(u,NORM_2,norm)); |
| 253 | #if !defined(PETSC_USE_COMPLEX) | ||
| 254 | } else { | ||
| 255 | ✗ | PetscCall((*matmult)(A,xr,u)); | |
| 256 | ✗ | if (SlepcAbsEigenvalue(kr,ki) > PETSC_MACHINE_EPSILON) { | |
| 257 | ✗ | PetscCall(VecAXPY(u,-kr,xr)); | |
| 258 | ✗ | PetscCall(VecAXPY(u,ki,xi)); | |
| 259 | } | ||
| 260 | ✗ | PetscCall(VecNorm(u,NORM_2,&nr)); | |
| 261 | ✗ | PetscCall((*matmult)(A,xi,u)); | |
| 262 | ✗ | if (SlepcAbsEigenvalue(kr,ki) > PETSC_MACHINE_EPSILON) { | |
| 263 | ✗ | PetscCall(VecAXPY(u,-kr,xi)); | |
| 264 | ✗ | PetscCall(VecAXPY(u,-ki,xr)); | |
| 265 | } | ||
| 266 | ✗ | PetscCall(VecNorm(u,NORM_2,&ni)); | |
| 267 | ✗ | *norm = SlepcAbsEigenvalue(nr,ni); | |
| 268 | } | ||
| 269 | #endif | ||
| 270 |
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68 | PetscFunctionReturn(PETSC_SUCCESS); |
| 271 | } | ||
| 272 | |||
| 273 | /*TEST | ||
| 274 | |||
| 275 | testset: | ||
| 276 | args: -st_type sinvert -eps_target 1.1 -eps_nev 4 | ||
| 277 | filter: grep -v method | sed -e "s/[+-]0\.0*i//g" | sed -e "s/[0-9]\.[0-9]*e[+-]\([0-9]*\)/removed/g" | ||
| 278 | requires: !single | ||
| 279 | output_file: output/ex41_1.out | ||
| 280 | test: | ||
| 281 | suffix: 1 | ||
| 282 | args: -eps_type {{power krylovschur}} | ||
| 283 | test: | ||
| 284 | suffix: 1_balance | ||
| 285 | args: -eps_balance {{oneside twoside}} -eps_ncv 17 -eps_krylovschur_locking 0 | ||
| 286 | requires: !__float128 | ||
| 287 | |||
| 288 | TEST*/ | ||
| 289 |